Diversas bases de dados e ferramentas
Biological Databases for Human Research - Um artigo que revê e principalmente classifica os diferentes tipos de bases de dados biológicas https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4411498/
SciCrunch Registry - Portal do NIH de acesso a diferentes bases de dados e ferramentas https://dknet.org/rin/rridshttps://scicrunch.org
ALLBIO-TOOLS - Lista bastante exaustiva de bases de dados e ferramentas bioinformáticas http://bioinformatics.hgen.slu.se/ALLBIO-TOOLS/
EBI (European Bioinformatics Institute) https://www.ebi.ac.uk
GenBank NIH genetic sequence database https://www.ncbi.nlm.nih.gov/genbank/
DDBJ DNA Data Bank of Japan https://www.ddbj.nig.ac.jp/index-e.html
BioCyc collection of 13075 Pathway/Genome Databases (PGDBs), plus software tools for exploring them https://biocyc.org
DAVID (Database for Annotation, Visualization and Integrated Discovery) https://david.ncifcrf.gov
iLINCS (portal de integração de dados "omics") http://www.ilincs.org/ilincs/
BioGRID (portal de interações moleculares) https://thebiogrid.org
RefSeq NCBI reference sequences https://www.ncbi.nlm.nih.gov/refseq/
UCSC genome browser (com acesso a diversas ferramentas de análise, possibilitando uma visão de conjunto dos genomas animais disponíveis) https://genome-euro.ucsc.edu/cgi-bin/hgGateway
PubTator NCBI https://www.ncbi.nlm.nih.gov/research/pubtator/
ChiliBot Mining PubMed for Relationships http://www.chilibot.net/index.html
dbGAP NCBI database of Genotypes and Phenotypes https://www.ncbi.nlm.nih.gov/gap
dbSNP NCBI Search small variations in dbSNP https://www.ncbi.nlm.nih.gov/projects/SNP/
dbVar NCBI Search large structural variations in dbVar https://www.ncbi.nlm.nih.gov/dbvar
GEO (Gene Expression Omnibus) NCBI functional genomics data repository supporting MIAME-compliant data submissions https://www.ncbi.nlm.nih.gov/geo/
Ingenuity QIAGEN Pathway Analysis tool https://digitalinsights.qiagen.com/products-overview/discovery-insights-portfolio/analysis-and-visualization/qiagen-ipa/
BRENDA (Braunschweig Enzyme Database) https://www.brenda-enzymes.org
KEGG (Kyoto Encyclopedia of Genes and Genomes) http://www.genome.jp/kegg/
WikiPathways https://www.wikipathways.org/
PubChem NCBI chemistry database https://pubchem.ncbi.nlm.nih.gov
OpenPhacts pharmacological data resources http://www.openphacts.org/index.php
BioGRID Biological General Repository for Interaction Datasets https://thebiogrid.org
STRING (Search Tool for the Retrieval of Interacting Genes/Proteins) https://string-db.org
JASPAR transcription factor binding profiles http://jaspar.genereg.net
CDD NCBI Conserved Domains and Protein Classification https://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml
ExPASY Swiss Institute of Bioinformatics (SIB) Bioinformatics Resource Portal https://www.expasy.org e também https://www.sib.swiss/services/open-software-and-databases ou por exemplo https://www.expasy.org/proteomics
GPM (The Global Proteome Machine) https://gpmdb.thegpm.org
PeptideAtlas tandem mass spectrometry proteomics experiments https://peptideatlas.org
PIR (Protein Information Resource) https://proteininformationresource.org
RCSB PDB (Protein Data Bank) 3D shapes of proteins, nucleic acids, and complex assemblies http://www.rcsb.org
iHOP (Information Hyperlinked Over Proteins) text mining – ver introdução e tutorial https://www.wikigenes.org
FlyBase Database of Drosophila http://flybase.org
MGI (Mouse Genome Informatics) Jackson Laboratory http://www.informatics.jax.org
SGD (Saccharomyces Genome Database) https://www.yeastgenome.org