A lista proposta incide sobre algumas escolhas que são consideradas mais relevantes. Para uma listagem mais exaustiva, consultar as de Felsenstein: local installation softwares server sites
Suites com várias funcionalidadesMEGA(Windows, MacOS, Linux)http://www.megasoftware.net PAUP*(MacOS 9-10.3, Windows)http://paup.csit.fsu.edu/ MacClade(MacOS <10.7)http://www.macclade.org/index.html Mesquite(mesmos autores do MacClade; Windows, Mac, Linux)http://mesquiteproject.org/mesquite/features.html TNT(Windows, Linux; MacOS obsoleta)http://www.zmuc.dk/public/phylogeny/TNT/ PAL(Phylogenetic Analysis Library; Java)http://www.cebl.auckland.ac.nz/pal-project/features.html Pebble(Windows, Mac, Linux)http://www.cebl.auckland.ac.nz/software2.php PyCogent.app(Python + MacOS 10.6)http://pycogent.sourceforge.net/ ANeCA(Automatic Network Clade Analysis; Java)http://www.rubic.rdg.ac.uk/~mahesh/software.html NETWORK(Windows) 'generates evolutionary trees and networks'http://www.fluxus-engineering.com/sharenet.htm |
Inferência BayesianaCIPRES Science Gateway(servidor)http://www.phylo.org/index.php/ MrBayes(Windows, MacOS)http://mrbayes.sourceforge.net/index.php BP&P(Windows, MacOS)http://abacus.gene.ucl.ac.uk/software.html TOPALi(Windows, MacOS, Linux, Solaris)http://www.topali.org/ Interfaces gráficas especiaisFlapjackhttp://bioinf.hutton.ac.uk/flapjack/TreeGraph(Java)http://treegraph.bioinfweb.info/ PhyDE(Java)http://www.phyde.de/ Ferramentas especializadasPOY(MacOS, Windows, Linux) - 'Phylogenetic Analysis of DNA and other data using dynamic homology'http://www.amnh.org/our-research/computational-sciences/research/projects/systematic-biology/poy PRAP(Java) - parsimony ratchethttp://bioinfweb.info/Software/PRAP2 CRANN(MacOS, Windows, Linux) - 'detecting adaptive evolution in protein-coding genes'http://bioinf.may.ie/crann/ |
Genética de populaçõesGENEPOP(Windows, Linux)http://kimura.univ-montp2.fr/~rousset/Genepop.htm Arlequin(Windows, Linux) - AMOVA, etc.http://cmpg.unibe.ch/software/arlequin35/ FSTAT(Windows) - inclui o GST de Neihttp://www2.unil.ch/popgen/softwares/fstat.htm Geneland(add-on do programa R; Windows, MacOS, Linux)http://www2.imm.dtu.dk/~gigu/Geneland/ GSED(Windows, Linux) - Estatísticas de Gregorius et al.http://www.uni-goettingen.de/de/95607.html |